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BMCBI
2011
14 years 3 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
IWMM
2009
Springer
127views Hardware» more  IWMM 2009»
15 years 6 months ago
Investigating the effects of using different nursery sizing policies on performance
In this paper, we investigate the effects of using three different nursery sizing policies on overall and garbage collection performances. As part of our investigation, we modify ...
Xiaohua Guan, Witawas Srisa-an, ChengHuan Jia
FCCM
2000
IEEE
122views VLSI» more  FCCM 2000»
15 years 4 months ago
Evaluating Hardware Compilation Techniques
Hardware compilation techniques which use highlevel programming languages to describe and synthesize hardware are gaining popularity. They are especially useful for reconfigurable...
Markus Weinhardt, Wayne Luk
IEEEPACT
1998
IEEE
15 years 4 months ago
Static Methods in Hybrid Branch Prediction
Hybrid branch predictors combine the predictions of multiple single-level or two-level branch predictors. The prediction-combining hardware -- the "meta-predictor" -may ...
Dirk Grunwald, Donald C. Lindsay, Benjamin G. Zorn
HPCC
2007
Springer
15 years 6 months ago
Throttling I/O Streams to Accelerate File-IO Performance
To increase the scale and performance of scientific applications, scientists commonly distribute computation over multiple processors. Often without realizing it, file I/O is pa...
Seetharami R. Seelam, Andre Kerstens, Patricia J. ...