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BMCBI
2007
180views more  BMCBI 2007»
14 years 9 months ago
Using expression arrays for copy number detection: an example from E. coli
Background: The sequencing of many genomes and tiling arrays consisting of millions of DNA segments spanning entire genomes have made high-resolution copy number analysis possible...
Dmitriy Skvortsov, Diana Abdueva, Michael E. Stitz...
BIOINFORMATICS
2006
82views more  BIOINFORMATICS 2006»
14 years 10 months ago
ZooDDD: a cross-species database for digital differential display analysis
SUMMARY: In this paper, we combined EST information from the UniGene database and orthologous relationships from the Ensembl database to construct a ZooDDD database. The primary f...
Yun-Ching Chen, Chung-Der Hsiao, Wen-Dar Lin, Chun...
NAR
2006
88views more  NAR 2006»
14 years 9 months ago
RMD: a rice mutant database for functional analysis of the rice genome
Rice Mutant Database (RMD, http://rmd.ncpgr.cn) is an archive for collecting, managing and searching information of the T-DNA insertion mutants generated by an enhancer trap syste...
Jianwei Zhang, Caishun Li, Changyin Wu, Lizhong Xi...
BMCBI
2007
159views more  BMCBI 2007»
14 years 10 months ago
Detecting differential expression in microarray data: comparison of optimal procedures
Background: Many procedures for finding differentially expressed genes in microarray data are based on classical or modified t-statistics. Due to multiple testing considerations, ...
Elena Perelman, Alexander Ploner, Stefano Calza, Y...
BMCBI
2010
91views more  BMCBI 2010»
14 years 10 months ago
Algorithm-driven Artifacts in median polish summarization of Microarray data
Background: High-throughput measurement of transcript intensities using Affymetrix type oligonucleotide microarrays has produced a massive quantity of data during the last decade....
Federico M. Giorgi, Anthony M. Bolger, Marc Lohse,...