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DATE
2010
IEEE
163views Hardware» more  DATE 2010»
15 years 7 months ago
Efficient High-Level modeling in the networking domain
-- Starting Electronic System Level (ESL) design flows with executable High-Level Models (HLMs) has the potential to sustainably improve productivity. However, writing good HLMs fo...
Christian Zebelein, Joachim Falk, Christian Haubel...
JCB
2006
114views more  JCB 2006»
15 years 3 months ago
A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes is built using the Gillespie algorithm with time delays as an example of a simpl...
Andre Ribeiro, Rui Zhu, Stuart A. Kauffman
CONSTRAINTS
2008
121views more  CONSTRAINTS 2008»
15 years 3 months ago
Modeling Biological Networks by Action Languages via Answer Set Programming
We describe an approach to modeling biological networks by action languages via answer set programming. To this end, we propose an action language for modeling biological networks...
Steve Dworschak, Susanne Grell, Victoria J. Nikifo...
110
Voted
TSP
2010
14 years 10 months ago
Selection policy-induced reduction mappings for Boolean networks
Developing computational models paves the way to understanding, predicting, and influencing the long-term behavior of genomic regulatory systems. However, several major challenges ...
Ivan Ivanov, Plamen Simeonov, Noushin Ghaffari, Xi...
127
Voted
CORR
2012
Springer
210views Education» more  CORR 2012»
13 years 11 months ago
Topological phase transition in a network model with preferential attachment and node removal
Preferential attachment is a popular model of growing networks. We consider a generalized model with random node removal, and a combination of preferential and random attachment. U...
Heiko Bauke, Cristopher Moore, Jean-Baptiste Rouqu...