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» Network constrained clustering for gene microarray data
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111
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BMCBI
2005
189views more  BMCBI 2005»
14 years 9 months ago
Quantitative inference of dynamic regulatory pathways via microarray data
Background: The cellular signaling pathway (network) is one of the main topics of organismic investigations. The intracellular interactions between genes in a signaling pathway ar...
Wen-Chieh Chang, Chang-Wei Li, Bor-Sen Chen
ACAL
2007
Springer
15 years 3 months ago
An Integrated QAP-Based Approach to Visualize Patterns of Gene Expression Similarity
Abstract. This paper illustrates how the Quadratic Assignment Problem (QAP) is used as a mathematical model that helps to produce a visualization of microarray data, based on the r...
Mario Inostroza-Ponta, Alexandre Mendes, Regina Be...
BMCBI
2010
243views more  BMCBI 2010»
14 years 9 months ago
Comparative study of unsupervised dimension reduction techniques for the visualization of microarray gene expression data
Background: Visualization of DNA microarray data in two or three dimensional spaces is an important exploratory analysis step in order to detect quality issues or to generate new ...
Christoph Bartenhagen, Hans-Ulrich Klein, Christia...
91
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WILF
2005
Springer
112views Fuzzy Logic» more  WILF 2005»
15 years 3 months ago
NEC for Gene Expression Analysis
Aim of this work is to apply a novel comprehensive machine learning tool for data mining to preprocessing and interpretation of gene expression data. Furthermore, some visualizatio...
Roberto Amato, Angelo Ciaramella, N. Deniskina, Ca...
JBI
2004
171views Bioinformatics» more  JBI 2004»
14 years 11 months ago
Consensus Clustering and Functional Interpretation of Gene Expression Data
Microarray analysis using clustering algorithms can suffer from lack of inter-method consistency in assigning related gene-expression profiles to clusters. Obtaining a consensus s...
Paul Kellam, Stephen Swift, Allan Tucker, Veronica...