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» Network constrained clustering for gene microarray data
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BMCBI
2005
112views more  BMCBI 2005»
14 years 9 months ago
Visualization methods for statistical analysis of microarray clusters
Background: The most common method of identifying groups of functionally related genes in microarray data is to apply a clustering algorithm. However, it is impossible to determin...
Matthew A. Hibbs, Nathaniel C. Dirksen, Kai Li, Ol...
BIBE
2007
IEEE
195views Bioinformatics» more  BIBE 2007»
15 years 4 months ago
Finding Clusters of Positive and Negative Coregulated Genes in Gene Expression Data
— In this paper, we propose a system for finding partial positive and negative coregulated gene clusters in microarray data. Genes are clustered together if they show the same p...
Kerstin Koch, Stefan Schönauer, Ivy Jansen, J...
IDEAL
2004
Springer
15 years 3 months ago
Visualisation of Distributions and Clusters Using ViSOMs on Gene Expression Data
Microarray datasets are often too large to visualise due to the high dimensionality. The self-organising map has been found useful to analyse massive complex datasets. It can be us...
Swapna Sarvesvaran, Hujun Yin
BMCBI
2008
115views more  BMCBI 2008»
14 years 9 months ago
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
Background: Currently, clustering with some form of correlation coefficient as the gene similarity metric has become a popular method for profiling genomic data. The Pearson corre...
Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung S...
BIBM
2009
IEEE
172views Bioinformatics» more  BIBM 2009»
15 years 2 months ago
Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis
—A comprehensive understanding of cancer progression may shed light on genetic and molecular mechanisms of oncogenesis, and it may provide much needed information for effective d...
Yoon Soo Pyon, Jing Li