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» New Algorithms for SIMD Alignment
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ICRA
2006
IEEE
111views Robotics» more  ICRA 2006»
15 years 6 months ago
Aligning Windows of Live Video From an Imprecise Pan-tilt-zoom Robotic Camera into a Remote Panoramic Display
— A pan-tilt-zoom robotic camera can provide detailed live video of selected areas of interest within a large potential viewing field. To provide spatial context for human obser...
Ni Qin, Dezhen Song, Kenneth Y. Goldberg
122
Voted
RECOMB
1998
Springer
15 years 4 months ago
Alignments without low-scoring regions
Given a strong match between regions of two sequences, how far can the match be meaningfully extended if gaps are allowed in the resulting alignment? The aim is to avoid searching...
Zheng Zhang 0004, Piotr Berman, Webb Miller
104
Voted
BMCBI
2007
233views more  BMCBI 2007»
15 years 16 days ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
99
Voted
SIGMOD
2010
ACM
231views Database» more  SIGMOD 2010»
15 years 5 months ago
Automatically incorporating new sources in keyword search-based data integration
Scientific data offers some of the most interesting challenges in data integration today. Scientific fields evolve rapidly and accumulate masses of observational and experiment...
Partha Pratim Talukdar, Zachary G. Ives, Fernando ...
74
Voted
RECOMB
2005
Springer
16 years 22 days ago
A Practical Approach to Significance Assessment in Alignment with Gaps
Abstract. Current numerical methods for assessing the statistical significance of local alignments with gaps are time consuming. Analytical solutions thus far have been limited to ...
Nicholas Chia, Ralf Bundschuh