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» New Algorithms for SIMD Alignment
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CORR
2007
Springer
165views Education» more  CORR 2007»
15 years 12 days ago
Comparison of Tree-Child Phylogenetic Networks
Abstract—Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization...
Gabriel Cardona, Francesc Rosselló, Gabriel...
99
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BMCBI
2008
145views more  BMCBI 2008»
15 years 17 days ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
ICA
2007
Springer
15 years 6 months ago
Solving the Permutation Problem in Convolutive Blind Source Separation
Abstract. This paper presents a new algorithm for solving the permutation ambiguity in convolutive blind source separation. When transformed to the frequency domain, the source sep...
Radoslaw Mazur, Alfred Mertins
108
Voted
RECOMB
2004
Springer
16 years 23 days ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
104
Voted
BMCBI
2010
193views more  BMCBI 2010»
15 years 17 days ago
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
Background: Mass spectrometry (MS) coupled with online separation methods is commonly applied for differential and quantitative profiling of biological samples in metabolomic as w...
Tomás Pluskal, Sandra Castillo, Alejandro V...