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» New Algorithms for Statistical Analysis of Interval Data
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BMCBI
2010
116views more  BMCBI 2010»
15 years 6 months ago
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments
Background: High throughput sequencing has become an increasingly important tool for biological research. However, the existing software systems for managing and processing these ...
David B. Burdick, Christopher C. Cavnor, Jeremy Ha...
167
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SIGCOMM
2006
ACM
16 years 17 hour ago
Systematic topology analysis and generation using degree correlations
Researchers have proposed a variety of metrics to measure important graph properties, for instance, in social, biological, and computer networks. Values for a particular graph met...
Priya Mahadevan, Dmitri V. Krioukov, Kevin R. Fall...
197
Voted
BMCBI
2006
161views more  BMCBI 2006»
15 years 6 months ago
A method for rapid similarity analysis of RNA secondary structures
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Na Liu, Tianming Wang
BMCBI
2008
179views more  BMCBI 2008»
15 years 6 months ago
Bayesian modeling of recombination events in bacterial populations
Background: We consider the discovery of recombinant segments jointly with their origins within multilocus DNA sequences from bacteria representing heterogeneous populations of fa...
Pekka Marttinen, Adam Baldwin, William P. Hanage, ...
CIDR
2009
159views Algorithms» more  CIDR 2009»
15 years 7 months ago
RIOT: I/O-Efficient Numerical Computing without SQL
R is a numerical computing environment that is widely popular for statistical data analysis. Like many such environments, R performs poorly for large datasets whose sizes exceed t...
Yi Zhang 0011, Herodotos Herodotou, Jun Yang 0001