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SIMUTOOLS
2008
15 years 6 months ago
Snoopy: a tool to design and animate/simulate graph-based formalisms
We sketch the fundamental properties and features of Snoopy, a tool to model and execute (animate, simulate) hierarchical graph-based system descriptions. The tool comes along wit...
Monika Heiner, Ronny Richter, Martin Schwarick
CSL
2010
Springer
15 years 5 months ago
Ordered Sets in the Calculus of Data Structures
Our goal is to identify families of relations that are useful for reasoning about software. We describe such families using decidable quantifier-free classes of logical constraints...
Viktor Kuncak, Ruzica Piskac, Philippe Suter
125
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BMCBI
2008
244views more  BMCBI 2008»
15 years 4 months ago
RNAalifold: improved consensus structure prediction for RNA alignments
Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...
BMCBI
2008
110views more  BMCBI 2008»
15 years 4 months ago
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated da
Background: We have previously described an approach to predicting the substrate specificity of serine-threonine protein kinases. The method, named Predikin, identifies key conser...
Neil F. W. Saunders, Ross I. Brinkworth, Thomas Hu...
JDWM
2007
122views more  JDWM 2007»
15 years 4 months ago
A Hyper-Heuristic for Descriptive Rule Induction
Rule induction from examples is a machine learning technique that finds rules of the form condition → class, where condition and class are logic expressions of the form variable...
Tho Hoan Pham, Tu Bao Ho