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» New Approaches to Compare Phylogenetic Search Heuristics
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FLAIRS
2008
14 years 12 months ago
A New Approach to Heuristic Estimations for Cost-Based Planning
Solving relaxed problems is a commonly used technique in heuristic search to derive heuristic estimates. In heuristic planning, this is usually done by expanding a planning (reach...
Raquel Fuentetaja, Daniel Borrajo, Carlos Linares ...
IPPS
2010
IEEE
14 years 7 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
JAMDS
2002
155views more  JAMDS 2002»
14 years 9 months ago
A new heuristic for the quadratic assignment problem
We propose a new heuristic for the solution of the quadratic assignment problem. The heuristic combines ideas from tabu search and genetic algorithms. Run times are very short comp...
Zvi Drezner
SODA
2004
ACM
124views Algorithms» more  SODA 2004»
14 years 11 months ago
On contract-and-refine transformations between phylogenetic trees
The inference of evolutionary trees using approaches which attempt to solve the maximum parsimony (MP) and maximum likelihood (ML) optimization problems is a standard part of much...
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy ...
BMEI
2008
IEEE
15 years 4 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang