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BMCBI
2011
14 years 8 months ago
RAG: An Update to the RNA-As-Graphs Resource
Background: In 2004, we presented a web resource for stimulating the search for novel RNAs, RNA-As-Graphs (RAG), which classified, catalogued, and predicted RNA secondary structur...
Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly, Tam...
ACMSE
2005
ACM
15 years 10 months ago
The bipartite clique: a topological paradigm for WWWeb user search customization
Web user search customization research has been fueled by the recognition that if the WWW is to attain to its optimal potential as an interactive medium the development of new and...
Brenda F. Miles, Vir V. Phoha
BMCBI
2006
249views more  BMCBI 2006»
15 years 4 months ago
Gene functional similarity search tool (GFSST)
Background: With the completion of the genome sequences of human, mouse, and other species and the advent of high throughput functional genomic research technologies such as biomi...
Peisen Zhang, Jinghui Zhang, Huitao Sheng, James J...
SIGMOD
2009
ACM
235views Database» more  SIGMOD 2009»
16 years 4 months ago
Quality and efficiency in high dimensional nearest neighbor search
Nearest neighbor (NN) search in high dimensional space is an important problem in many applications. Ideally, a practical solution (i) should be implementable in a relational data...
Yufei Tao, Ke Yi, Cheng Sheng, Panos Kalnis
BMCBI
2005
123views more  BMCBI 2005»
15 years 4 months ago
PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
Background: Protein sequence alignments have become indispensable for virtually any evolutionary, structural or functional study involving proteins. Modern sequence search and com...
Mindaugas Margelevicius, Ceslovas Venclovas