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SAC
2003
ACM
15 years 5 months ago
Similar_Join: Extending DBMS with a Bio-specific Operator
Existing sequence comparison software applications lack automation, abstraction, performance, and flexibility. Users need a new way of studying and applying sequence comparisons i...
Jake Yue Chen, John V. Carlis
BMCBI
2008
153views more  BMCBI 2008»
14 years 12 months ago
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Background: The ESTree database (db) is a collection of Prunus persica and Prunus dulcis EST sequences that in its current version encompasses 75,404 sequences from 3 almond and 1...
Barbara Lazzari, Andrea Caprera, Alberto Vecchiett...
BMCBI
2011
14 years 3 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
DEBU
1998
57views more  DEBU 1998»
14 years 11 months ago
Virtual Database technology, XML, and the Evolution of the Web
We describe Junglee’s Virtual Database (VDB) technology, which makes the World Wide Web and other external data sources behave as an extension of an enterprise’s relational da...
S. T. S. Prasad, Anand Rajaraman
GIS
2004
ACM
16 years 24 days ago
Object-relational management of complex geographical objects
Modern database applications including computer-aided design, multimedia information systems, medical imaging, molecular biology, or geographical information systems impose new re...
Hans-Peter Kriegel, Peter Kunath, Martin Pfeifle, ...