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WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
15 years 4 months ago
A General Framework for Local Pairwise Alignment Statistics with Gaps
We present a novel dynamic programming framework that allows one to compute tight upper bounds for the p-values of gapped local alignments in pseudo–polynomial time. Our algorith...
Pasi Rastas
58
Voted
FSTTCS
2008
Springer
14 years 10 months ago
Dynamic matrix rank with partial lookahead
We consider the problem of maintaining information about the rank of a matrix M under changes to its entries. For an n × n matrix M, we show an amortized upper bound of O(nω−1)...
Telikepalli Kavitha
JCT
2007
103views more  JCT 2007»
14 years 9 months ago
Geometric drawings of Kn with few crossings
We give a new upper bound for the rectilinear crossing number cr(n) of the complete geometric graph Kn. We prove that cr(n) ≤ 0.380559 ¡n 4 ¢ + Θ(n3 ) by means of a new const...
Bernardo M. Ábrego, Silvia Fernández...
AIPS
2004
14 years 11 months ago
Iterative Relaxations for Iterative Flattening in Cumulative Scheduling
Cumulative scheduling is a generalization of jobshop scheduling, where machines have discrete capacities and activities may require several capacity units. This paper considers it...
Laurent Michel, Pascal Van Hentenryck
DATE
2003
IEEE
116views Hardware» more  DATE 2003»
15 years 3 months ago
Statistical Timing Analysis Using Bounds
The growing impact of within-die process variation has created the need for statistical timing analysis, where gate delays are modeled as random variables. Statistical timing anal...
Aseem Agarwal, David Blaauw, Vladimir Zolotov, Sar...