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GCB
2004
Springer
223views Biometrics» more  GCB 2004»
15 years 10 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
EUROPAR
2006
Springer
15 years 10 months ago
Specification of Inefficiency Patterns for MPI-2 One-Sided Communication
Abstract. Automatic performance analysis of parallel programs can be accomplished by scanning event traces of program execution for patterns representing inefficient behavior. The ...
Andrej Kühnal, Marc-André Hermanns, Be...
ICALP
2000
Springer
15 years 9 months ago
A Bound on the Capacity of Backoff and Acknowledgement-Based Protocols
We study contention-resolution protocols for multiple-access channels. We show that every backoff protocol is transient if the arrival rate, , is at least 0.42 and that the capaci...
Leslie Ann Goldberg, Mark Jerrum, Sampath Kannan, ...
TOOLS
1998
IEEE
15 years 9 months ago
Designing Persistent Object-Oriented Software Architectures
Conventional object-oriented analysis delivers a business object model, which is transformed during design into collaborating class clusters which implement the business model...
Paul Taylor
DAC
2010
ACM
15 years 9 months ago
On the costs and benefits of stochasticity in stream processing
With the end of clock-frequency scaling, parallelism has emerged as the key driver of chip-performance growth. Yet, several factors undermine efficient simultaneous use of onchip ...
Raj R. Nadakuditi, Igor L. Markov