Background: The integration of genomic information with quantitative experimental data is a key component of systems biology. An increasing number of microbial genomes are being s...
In this paper, we propose a novel data mining scheme to explore the frequent hierarchical structure patterns, named tree-like patterns, with the relationship of each item on a sequ...
The evolution of dependencies in information hierarchies can be modeled by sequences of compound digraphs with edge weights. In this paper we present a novel approach to visualize...
We study the problem of computing zigzag persistence of a sequence of homology groups and study a particular sequence derived from the levelsets of a real-valued function on a top...
LTR retrotransposons constitute one of the most abundant classes of repetitive elements in eukaryotic genomes. In this paper, we present a new algorithm for detection of full-leng...