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» OLAP on sequence data
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142
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SAC
2008
ACM
15 years 3 months ago
XBird/D: distributed and parallel XQuery processing using remote proxy
In this paper, we focus on an aspect of distributed XQuery processing that involves data exchanges between processor elements. We first address problems of distributed XML query p...
Makoto Yui, Jun Miyazaki, Shunsuke Uemura, Hirokaz...
157
Voted
RECOMB
2008
Springer
16 years 4 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...
ICDM
2007
IEEE
131views Data Mining» more  ICDM 2007»
15 years 10 months ago
Characterizing RNA Secondary-Structure Features and Their Effects on Splice-Site Prediction
— RNA molecules are distinguished by their sequence composition and by their three-dimensional shape, called the secondary structure. The secondary structure of a pre-mRNA sequen...
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur
129
Voted
NAR
2008
122views more  NAR 2008»
15 years 3 months ago
The Rice Annotation Project Database (RAP-DB): 2008 update
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated ann...
VLDB
2008
ACM
110views Database» more  VLDB 2008»
16 years 4 months ago
Enhancing histograms by tree-like bucket indices
Histograms are used to summarize the contents of relations into a number of buckets for the estimation of query result sizes. Several techniques (e.g., MaxDiff and V-Optimal) have ...
Francesco Buccafurri, Gianluca Lax, Domenico SaccĂ...