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DATASCIENCE
2002
53views more  DATASCIENCE 2002»
15 years 4 months ago
An Integrated Receptor Database (IRDB)
Various receptor data were collected, edited and integrated into an Integrated Receptor Database (IRDB). The data stored includes structural data (amino acid sequences, their seco...
Kotoko Nakata, Takako Takai-Igarashi, Tatsuya Naka...
IJDMMM
2008
72views more  IJDMMM 2008»
15 years 4 months ago
Mining event histories: a social science perspective
We explore how recent data-mining-based tools developed in domains such as biomedicine or text-mining for extracting interesting knowledge from sequence data could be applied to pe...
Gilbert Ritschard, Alexis Gabadinho, Nicolas S. M&...
BMCBI
2011
14 years 8 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
BMCBI
2006
100views more  BMCBI 2006»
15 years 4 months ago
DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions
Background: Many genome projects are left unfinished due to complex, repeated regions. Finishing is the most time consuming step in sequencing and current finishing tools are not ...
Erik Arner, Martti T. Tammi, Anh-Nhi Tran, Ellen K...
COMPLIFE
2005
Springer
15 years 10 months ago
Protein Annotation by Secondary Structure Based Alignments (PASSTA)
Abstract. Most software tools in homology recognition on proteins answer only a few specific questions, often leaving not much room for the interpretation of the results. We devel...
Constantin Bannert, Jens Stoye