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ICASSP
2007
IEEE
15 years 11 months ago
Toward Turbo Decoding of RNA Secondary Structure
We propose an iterative probabilistic algorithm for estimation of RNA secondary structure using sequence data from two homologous sequences. The method is intended to exploit inte...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
CPM
2007
Springer
101views Combinatorics» more  CPM 2007»
15 years 11 months ago
Improved Algorithms for Inferring the Minimum Mosaic of a Set of Recombinants
Abstract. Detecting historical recombination is an important computational problem which has received great attention recently. Due to recombination, input sequences form a mosaic,...
Yufeng Wu, Dan Gusfield
MICCAI
2005
Springer
15 years 10 months ago
Consistent Estimation of Cardiac Motions by 4D Image Registration
A 4D image registration method is proposed for consistent estimation of cardiac motion from MR image sequences. Under this 4D registration framework, all 3D cardiac images taken at...
Dinggang Shen, Hari Sundar, Zhong Xue, Yong Fan, H...
WABI
2005
Springer
110views Bioinformatics» more  WABI 2005»
15 years 10 months ago
Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)
Abstract. Traditional sequence comparison by alignment applies a mutation model comprising two events, substitutions and indels (insertions or deletions) of single positions (SI). ...
Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens...
CDB
2004
Springer
172views Database» more  CDB 2004»
15 years 10 months ago
Constraint Database Solutions to the Genome Map Assembly Problem
Abstract. Long DNA sequences have to be cut using restriction enzymes into small fragments whose lengths and/or nucleotide sequences can be analyzed by currently available technolo...
Viswanathan Ramanathan, Peter Z. Revesz