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SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
16 years 5 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
ICDM
2007
IEEE
227views Data Mining» more  ICDM 2007»
15 years 11 months ago
Optimal Subsequence Bijection
We consider the problem of elastic matching of sequences of real numbers. Since both a query and a target sequence may be noisy, i.e., contain some outlier elements, it is desirab...
Longin Jan Latecki, Qiang Wang, Suzan Koknar-Tezel...
CCECE
2006
IEEE
15 years 11 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
BMCBI
2010
139views more  BMCBI 2010»
15 years 5 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...
BMCBI
2007
167views more  BMCBI 2007»
15 years 5 months ago
Applying negative rule mining to improve genome annotation
Background: Unsupervised annotation of proteins by software pipelines suffers from very high error rates. Spurious functional assignments are usually caused by unwarranted homolog...
Irena I. Artamonova, Goar Frishman, Dmitrij Frishm...