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IPPS
2009
IEEE
15 years 8 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
IPPS
2009
IEEE
15 years 8 months ago
Handling OS jitter on multicore multithreaded systems
Various studies have shown that OS jitter can degrade parallel program performance considerably at large processor counts. Most sources of system jitter fall broadly into 5 catego...
Pradipta De, Vijay Mann, Umang Mittaly
IPPS
2009
IEEE
15 years 8 months ago
Implementing and evaluating multithreaded triad census algorithms on the Cray XMT
Commonly represented as directed graphs, social networks depict relationships and behaviors among social entities such as people, groups, and organizations. Social network analysi...
George Chin Jr., Andrès Márquez, Sut...
IPPS
2009
IEEE
15 years 8 months ago
Annotation-based empirical performance tuning using Orio
In many scientific applications, significant time is spent tuning codes for a particular highperformance architecture. Tuning approaches range from the relatively nonintrusive (...
Albert Hartono, Boyana Norris, Ponnuswamy Sadayapp...
IPPS
2009
IEEE
15 years 8 months ago
Phaser accumulators: A new reduction construct for dynamic parallelism
A reduction is a computation in which a common operation, such as a sum, is to be performed across multiple pieces of data, each supplied by a separate task. We introduce phaser a...
Jun Shirako, David M. Peixotto, Vivek Sarkar, Will...