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JCB
2002
116views more  JCB 2002»
15 years 3 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye
IPMI
2005
Springer
16 years 4 months ago
A Genetic Algorithm for the Topology Correction of Cortical Surfaces
We propose a technique to accurately correct the spherical topology of cortical surfaces. We construct a mapping from the original surface onto the sphere to detect topological def...
Florent Ségonne, W. Eric L. Grimson, Bruce ...
IWPEC
2009
Springer
15 years 10 months ago
Bounded-Degree Techniques Accelerate Some Parameterized Graph Algorithms
Many parameterized algorithms for NP-hard graph problems are search tree algorithms with sophisticated local branching rules. But it has also been noticed that the global structur...
Peter Damaschke
146
Voted
HIPC
2007
Springer
15 years 10 months ago
Accelerating Large Graph Algorithms on the GPU Using CUDA
Abstract. Large graphs involving millions of vertices are common in many practical applications and are challenging to process. Practical-time implementations using high-end comput...
Pawan Harish, P. J. Narayanan
155
Voted
SLS
2007
Springer
117views Algorithms» more  SLS 2007»
15 years 10 months ago
An Algorithm Portfolio for the Sub-graph Isomorphism Problem
Abstract. This work presents an algorithm for the sub-graph isomorphism problem based on a new pruning technique for directed graphs. During the tree search, the method checks if a...
Roberto Battiti, Franco Mascia