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» Odefy -- From discrete to continuous models
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CMSB
2007
Springer
15 years 3 months ago
A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets
We give a description of a Petri net-based framework for modelling and analysing biochemical pathways, which unifies the qualitative, stochastic and continuous paradigms. Each per...
David Gilbert, Monika Heiner, Sebastian Lehrack
CCE
2004
14 years 9 months ago
Efficient short-term scheduling of refinery operations based on a continuous time formulation
The problem addressed in this work is to develop a comprehensive mathematical programming model for the efficient scheduling of oil-refinery operations. Our approach is first to d...
Zhenya Jia, Marianthi G. Ierapetritou
BMCBI
2010
117views more  BMCBI 2010»
14 years 9 months ago
Beyond rotamers: a generative, probabilistic model of side chains in proteins
Background: Accurately covering the conformational space of amino acid side chains is essential for important applications such as protein design, docking and high resolution stru...
Tim Harder, Wouter Boomsma, Martin Paluszewski, Je...
PG
2003
IEEE
15 years 2 months ago
Adaptive Grouping and Subdivision for Simulating Hair Dynamics
We present a novel approach for adaptively grouping and subdividing hair using discrete level-of-detail (LOD) representations. The set of discrete LODs include hair strands, clust...
Kelly Ward, Ming C. Lin
BMCBI
2007
107views more  BMCBI 2007»
14 years 9 months ago
A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL
Background: Identity by descent (IBD) matrix estimation is a central component in mapping of Quantitative Trait Loci (QTL) using variance component models. A large number of algor...
Francois Besnier, Örjan Carlborg