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» On 3D Topological Relationships
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BMCBI
2004
73views more  BMCBI 2004»
14 years 11 months ago
Use of a structural alphabet for analysis of short loops connecting repetitive structures
Background: Because loops connect regular secondary structures, analysis of the former depends directly on the definition of the latter. The numerous assignment methods, however, ...
Laurent Fourrier, Cristina Benros, Alexandre G. de...
BIOINFORMATICS
2011
14 years 6 months ago
All-atom knowledge-based potential for RNA structure prediction and assessment
Motivation: Over the recent years, the vision that RNA simply serves as information transfer molecule has dramatically changed. The study of the sequence/structure/function relati...
Emidio Capriotti, Tomás Norambuena, Marc A....
NAR
2011
214views Computer Vision» more  NAR 2011»
14 years 2 months ago
DAnCER: Disease-Annotated Chromatin Epigenetics Resource
Chromatin modification (CM) is a set of epigenetic processes that govern many aspects of DNA replication, transcription and repair. CM is carried out by groups of physically inter...
Andrei L. Turinsky, Brian Turner, Rosanne C. Borja...
NAR
2011
305views Computer Vision» more  NAR 2011»
14 years 2 months ago
CDD: a Conserved Domain Database for the functional annotation of proteins
NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from...
Aron Marchler-Bauer, Shennan Lu, John B. Anderson,...
IMC
2007
ACM
15 years 1 months ago
Learning network structure from passive measurements
The ability to discover network organization, whether in the form of explicit topology reconstruction or as embeddings that approximate topological distance, is a valuable tool. T...
Brian Eriksson, Paul Barford, Robert Nowak, Mark C...