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BMCBI
2011
14 years 1 months ago
The Proteogenomic Mapping Tool
Background: High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods. To keep pace with the...
William S. Sanders, Nan Wang, Susan M. Bridges, Br...
DCC
2006
IEEE
15 years 9 months ago
The B-coder: An Improved Binary Arithmetic Coder and Probability Estimator
In this paper we present the B-coder, an efficient binary arithmetic coder that performs extremely well on a wide range of data. The B-coder should be classed as an `approximate&#...
Benjamin Kelly, David F. Brailsford
COCO
2009
Springer
131views Algorithms» more  COCO 2009»
15 years 4 months ago
A Multi-Round Communication Lower Bound for Gap Hamming and Some Consequences
—The Gap-Hamming-Distance problem arose in the context of proving space lower bounds for a number of key problems in the data stream model. In this problem, Alice and Bob have to...
Joshua Brody, Amit Chakrabarti
BMCBI
2007
128views more  BMCBI 2007»
14 years 9 months ago
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
Background: Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. Howeve...
Paolo Ferragina, Raffaele Giancarlo, Valentina Gre...
BMCBI
2007
175views more  BMCBI 2007»
14 years 9 months ago
Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
Background: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using...
Kathrin Klee, Rebecca Ernst, Manuel Spannagl, Klau...