Background: Tandem mass spectrometry (MS/MS) is a powerful tool for protein identification. Although great efforts have been made in scoring the correlation between tandem mass sp...
We consider programming language aspects of algorithms that operate on data too large to fit into memory. In previous work we have introduced IntML, a functional programming langu...
Irregular parallel algorithms pose a significant challenge for achieving high performance because of the difficulty predicting memory access patterns or execution paths. Within an...
As protein-protein interactions are one of the basic mechanisms in most cellular processes, it is desirable to understand the molecular details of protein-protein contacts and ult...
Information-rich environments are the open environments that characterize most of the modern applications of computing technology. The applications include ubiquitous information a...