Recently, profile context-sensitive HMMs (profile-csHMMs) have been proposed which are very effective in modeling the common patterns and motifs in related symbol sequences. Pro...
We revisit the notion of computational depth and sophistication for infinite sequences and study the density of the sets of deep and sophisticated infinite sequences. Koppel defin...
Background: Tandem mass spectrometry (MS/MS) is a powerful tool for protein identification. Although great efforts have been made in scoring the correlation between tandem mass sp...
Although recent research has shown that the complexity of a network depends on its structural organization, which is linked to the functional constraints the network must satisfy, ...
It is well known that the base composition along eukaryotic genomes is long-range correlated. Here, we investigate the effect of such long-range correlations on alignment score sta...
Philipp W. Messer, Ralf Bundschuh, Martin Vingron,...