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» On Complexity Measures for Biological Sequences
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ICASSP
2007
IEEE
15 years 3 months ago
Fast Search of Sequences with Complex Symbol Correlations using Profile Context-Sensitive HMMS and Pre-Screening Filters
Recently, profile context-sensitive HMMs (profile-csHMMs) have been proposed which are very effective in modeling the common patterns and motifs in related symbol sequences. Pro...
Byung-Jun Yoon, P. P. Vaidyanathan
TCS
2010
14 years 4 months ago
Information measures for infinite sequences
We revisit the notion of computational depth and sophistication for infinite sequences and study the density of the sets of deep and sophisticated infinite sequences. Koppel defin...
Luis Filipe Coelho Antunes, Andre Souto
103
Voted
BMCBI
2006
172views more  BMCBI 2006»
14 years 9 months ago
A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data
Background: Tandem mass spectrometry (MS/MS) is a powerful tool for protein identification. Although great efforts have been made in scoring the correlation between tandem mass sp...
Zhuo Zhang, Shiwei Sun, Xiaopeng Zhu, Suhua Chang,...
COMPLEX
2009
Springer
15 years 4 months ago
Characterizing the Structural Complexity of Real-World Complex Networks
Although recent research has shown that the complexity of a network depends on its structural organization, which is linked to the functional constraints the network must satisfy, ...
Jun Wang, Gregory M. Provan
RECOMB
2006
Springer
15 years 9 months ago
Alignment Statistics for Long-Range Correlated Genomic Sequences
It is well known that the base composition along eukaryotic genomes is long-range correlated. Here, we investigate the effect of such long-range correlations on alignment score sta...
Philipp W. Messer, Ralf Bundschuh, Martin Vingron,...