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» On Complexity Measures for Biological Sequences
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STACS
2001
Springer
15 years 1 months ago
Randomness, Computability, and Density
We study effectively given positive reals (more specifically, computably enumerable reals) under a measure of relative randomness introduced by Solovay [32] and studied by Calud...
Rodney G. Downey, Denis R. Hirschfeldt, Andr&eacut...
CF
2007
ACM
15 years 1 months ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
DNA
2008
Springer
14 years 11 months ago
A Simple DNA Gate Motif for Synthesizing Large-Scale Circuits
The prospects of programming molecular systems to perform complex autonomous tasks has motivated research into the design of synthetic biochemical circuits. Of particular interest ...
Lulu Qian, Erik Winfree
BMCBI
2010
167views more  BMCBI 2010»
14 years 9 months ago
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach
Background: Transcriptional gene regulation is one of the most important mechanisms in controlling many essential cellular processes, including cell development, cell-cycle contro...
Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pag...
BMCBI
2010
118views more  BMCBI 2010»
14 years 9 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...