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» On Complexity Measures for Biological Sequences
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BMCBI
2006
117views more  BMCBI 2006»
14 years 9 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
TIT
2008
51views more  TIT 2008»
14 years 9 months ago
Spectral Relations for Multidimensional Complex Improper Stationary and (Almost) Cyclostationary Processes
Abstract--We study continuous-time multidimensional widesense stationary (WSS) and (almost) cyclostationary processes in the frequency domain. Under the assumption that the correla...
Patrik Wahlberg, Peter J. Schreier
BMCBI
2006
207views more  BMCBI 2006»
14 years 9 months ago
A new measure for functional similarity of gene products based on Gene Ontology
Background: Gene Ontology (GO) is a standard vocabulary of functional terms and allows for coherent annotation of gene products. These annotations provide a basis for new methods ...
Andreas Schlicker, Francisco S. Domingues, Jö...
ISMB
1994
14 years 10 months ago
An Efficient Method for Multiple Sequence Alignment
Multiple sequence alignment has been a useful methodin the study of molecular evolution and sequence-structure relationships. This paper presents a newmethodfor multiple sequence ...
Jin Kim, Sakti Pramanik
RECOMB
2010
Springer
14 years 7 months ago
Consistency of Sequence-Based Gene Clusters
In comparative genomics, various combinatorial models can be used to specify gene clusters — groups of genes that are co-located in a set of genomes. Several approaches have been...
Roland Wittler, Jens Stoye