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» On Complexity Measures for Biological Sequences
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ISMB
1998
14 years 10 months ago
Advanced Query Mechanisms for Biological Databases
Existing query interfaces for biological databases are either based on fixed forms or textual query languages. Users of a fixed form-based query interface are limited to performin...
I-Min A. Chen, Anthony Kosky, Victor M. Markowitz,...
ICPR
2008
IEEE
15 years 3 months ago
Birkhoff polytopes, heat kernels and graph complexity
In this paper we use doubly stochastic matrices to establish a link between Birkhoff polytopes and heat kernels on graphs. Based on this analysis we construct a multi-dimensional ...
Francisco Escolano, Edwin R. Hancock, Miguel Angel...
JMLR
2008
148views more  JMLR 2008»
14 years 9 months ago
Linear-Time Computation of Similarity Measures for Sequential Data
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
Konrad Rieck, Pavel Laskov
RECOMB
2002
Springer
15 years 9 months ago
Deconvolving sequence variation in mixed DNA populations
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
Andy Wildenberg, Steven Skiena, Pavel Sumazin
RECOMB
2004
Springer
15 years 9 months ago
Chromosomal breakpoint re-use in the inference of genome sequence rearrangement
In order to apply gene-order rearrangement algorithms to the comparison of genome sequences, Pevzner and Tesler [9] bypass gene finding and ortholog identification, and use the or...
David Sankoff, Phil Trinh