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» On Complexity Measures for Biological Sequences
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ISMB
1998
15 years 2 months ago
Advanced Query Mechanisms for Biological Databases
Existing query interfaces for biological databases are either based on fixed forms or textual query languages. Users of a fixed form-based query interface are limited to performin...
I-Min A. Chen, Anthony Kosky, Victor M. Markowitz,...
ICPR
2008
IEEE
15 years 8 months ago
Birkhoff polytopes, heat kernels and graph complexity
In this paper we use doubly stochastic matrices to establish a link between Birkhoff polytopes and heat kernels on graphs. Based on this analysis we construct a multi-dimensional ...
Francisco Escolano, Edwin R. Hancock, Miguel Angel...
JMLR
2008
148views more  JMLR 2008»
15 years 1 months ago
Linear-Time Computation of Similarity Measures for Sequential Data
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
Konrad Rieck, Pavel Laskov
RECOMB
2002
Springer
16 years 1 months ago
Deconvolving sequence variation in mixed DNA populations
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
Andy Wildenberg, Steven Skiena, Pavel Sumazin
RECOMB
2004
Springer
16 years 1 months ago
Chromosomal breakpoint re-use in the inference of genome sequence rearrangement
In order to apply gene-order rearrangement algorithms to the comparison of genome sequences, Pevzner and Tesler [9] bypass gene finding and ortholog identification, and use the or...
David Sankoff, Phil Trinh