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» On Complexity Measures for Biological Sequences
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BMCBI
2010
134views more  BMCBI 2010»
14 years 11 months ago
ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
Background: Many high-throughput genomic experiments, such as Synthetic Genetic Array and yeast two-hybrid, use colony growth on solid media as a screen metric. These experiments ...
John C. Dittmar, Robert J. D. Reid, Rodney Rothste...
EGC
2009
Springer
14 years 9 months ago
Discrepancy Analysis of Complex Objects Using Dissimilarities
Abstract. In this article we consider objects for which we have a matrix of dissimilarities and we are interested in their links with covariates. We focus on state sequences for wh...
Matthias Studer, Gilbert Ritschard, Alexis Gabadin...
COCOON
2007
Springer
15 years 5 months ago
Streaming Algorithms Measured in Terms of the Computed Quantity
The last decade witnessed the extensive studies of algorithms for data streams. In this model, the input is given as a sequence of items passing only once or a few times, and we ar...
Shengyu Zhang
BMEI
2008
IEEE
15 years 5 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
SAC
2003
ACM
15 years 4 months ago
Similar_Join: Extending DBMS with a Bio-specific Operator
Existing sequence comparison software applications lack automation, abstraction, performance, and flexibility. Users need a new way of studying and applying sequence comparisons i...
Jake Yue Chen, John V. Carlis