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» On Complexity Measures for Biological Sequences
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ISB
2002
140views more  ISB 2002»
14 years 11 months ago
Computer system "Gene Discovery" for promoter structure analysis
Data Mining and Knowledge Discovery techniques proved to be efficient tools for variety of complex tasks in biology including DNA research. This paper presents implementation of th...
Eugenii E. Vityaev, Yuri L. Orlov, Oleg V. Vishnev...
RECOMB
2006
Springer
15 years 11 months ago
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
Abstract. During evolution, genomes are subject to genome rearrangements that alter the ordering and orientation of genes on the chromosomes. If a genome consists of a single chrom...
Martin Bader, Enno Ohlebusch
ECCC
2006
107views more  ECCC 2006»
14 years 11 months ago
Energy Complexity and Entropy of Threshold Circuits
Abstract. Circuits composed of threshold gates (McCulloch-Pitts neurons, or perceptrons) are simplified models of neural circuits with the advantage that they are theoretically mor...
Wolfgang Maass, Kei Uchizawa, Rodney J. Douglas
CIKM
2005
Springer
15 years 4 months ago
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors
Many bioinformatics applications would benefit from comparing proteins based on their biological role rather than their sequence. In most biological databases, proteins are alrea...
Francisco M. Couto, Mário J. Silva, Pedro C...
METMBS
2004
140views Mathematics» more  METMBS 2004»
15 years 18 days ago
New Techniques for Generation and Analysis of Evolutionary Trees
We introduce new distance measures for the construction and analysis of phylogenies, focusing on thioredoxin-fold proteins. Our distance measures for tree construction are based o...
Chang Wang, Stephen D. Scott, Qingping Tao, Dmitri...