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» On Complexity Measures for Biological Sequences
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IPL
2008
95views more  IPL 2008»
14 years 11 months ago
Efficient algorithms for finding interleaving relationship between sequences
The longest common subsequence and sequence alignment problems have been studied extensively and they can be regarded as the relationship measurement between sequences. However, m...
Kuo-Si Huang, Chang-Biau Yang, Kuo-Tsung Tseng, Hs...
SETA
2004
Springer
79views Mathematics» more  SETA 2004»
15 years 4 months ago
A Survey of the Merit Factor Problem for Binary Sequences
A classical problem of digital sequence design, first studied in the 1950s but still not well understood, is to determine those binary sequences whose aperiodic autocorrelations ...
Jonathan Jedwab
HPDC
2010
IEEE
15 years 10 days ago
Biocompute: towards a collaborative workspace for data intensive bio-science
The explosion of data in the biological community demands the development of more scalable and flexible portals for bioinformatic computation. To address this need, we put forth c...
Rory Carmichael, Patrick Braga-Henebry, Douglas Th...
HPDC
2010
IEEE
15 years 10 days ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
JPDC
2007
167views more  JPDC 2007»
14 years 11 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...