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» On Complexity Measures for Biological Sequences
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CICLING
2012
Springer
13 years 7 months ago
Core-Periphery Organization of Graphemes in Written Sequences: Decreasing Positional Rigidity with Increasing Core Order
The positional rigidity of graphemes (as well as words considered as single units) in written sequences has been analyzed in this paper using complex network methodology. In partic...
Md. Izhar Ashraf, Sitabhra Sinha
CIBCB
2006
IEEE
15 years 5 months ago
Machine Learning in Basecalling Decoding Trace Peak Behaviour
— DNA sequence basecalling is commonly regarded as a solved problem, despite significant error rates being reflected in inaccuracies in databases and genome annotations. These er...
David Thornley, Stavros Petridis
IWPC
2007
IEEE
15 years 5 months ago
Empirical Evaluation of a UML Sequence Diagram with Adornments to Support Understanding of Thread Interactions
Programs that use multi-threaded concurrency are known to be difficult to design. Moreover, research in computer-science education suggests that concurrency and synchronization co...
Shaohua Xie, Eileen Kraemer, R. E. Kurt Stirewalt
BMCBI
2006
158views more  BMCBI 2006»
14 years 11 months ago
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Background: Non-coding RNAs (ncRNAs) have a multitude of roles in the cell, many of which remain to be discovered. However, it is difficult to detect novel ncRNAs in biochemical s...
Andrew V. Uzilov, Joshua M. Keegan, David H. Mathe...
RECOMB
1999
Springer
15 years 3 months ago
Fast detection of common geometric substructure in proteins
We consider the problem of identifying common three-dimensional substructures between proteins. Our method is based on comparing the shape of the α-carbon backbone structures of ...
L. Paul Chew, Daniel P. Huttenlocher, Klara Kedem,...