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» On Complexity Measures for Biological Sequences
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DAM
2007
120views more  DAM 2007»
14 years 11 months ago
Advances on sorting by reversals
Theproblemofsortingsignedpermutationsbyreversalsisinspiredbygenomerearrangementproblemsincomputationalmolecular biology. Given two genomes represented as signed permutations of th...
Eric Tannier, Anne Bergeron, Marie-France Sagot
BMCBI
2010
104views more  BMCBI 2010»
14 years 11 months ago
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand compl
Background: Protein-protein docking for proteins with large conformational changes was analyzed by using interaction fingerprints, one of the scales for measuring similarities amo...
Nobuyuki Uchikoga, Takatsugu Hirokawa
CORR
2010
Springer
155views Education» more  CORR 2010»
14 years 6 months ago
Exploiting Temporal Complex Network Metrics in Mobile Malware Containment
Malicious mobile phone worms spread between devices via short-range Bluetooth contacts, similar to the propagation of human and other biological viruses. Recent work has employed m...
John Tang, Cecilia Mascolo, Mirco Musolesi, Vito L...
BMCBI
2010
86views more  BMCBI 2010»
14 years 11 months ago
A novel approach to simulate gene-environment interactions in complex diseases
Background: Complex diseases are multifactorial traits caused by both genetic and environmental factors. They represent the major part of human diseases and include those with lar...
Roberto Amato, Michele Pinelli, Daniel D'Andrea, G...
BMCBI
2010
142views more  BMCBI 2010»
14 years 11 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...