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» On Complexity Measures for Biological Sequences
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ENGL
2008
78views more  ENGL 2008»
14 years 11 months ago
Threshold for Positional Weight Matrix
In biological sequence research, the positional weight matrix (PWM) is often used to search for putative transcription factor binding sites. A set of experimentally verified oligon...
Yunlian Pan, Sieu Phan
BMCBI
2006
147views more  BMCBI 2006»
14 years 11 months ago
QPath: a method for querying pathways in a protein-protein interaction network
Background: Sequence comparison is one of the most prominent tools in biological research, and is instrumental in studying gene function and evolution. The rapid development of hi...
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sh...
BMCBI
2010
138views more  BMCBI 2010»
14 years 11 months ago
UFFizi: a generic platform for ranking informative features
Background: Feature selection is an important pre-processing task in the analysis of complex data. Selecting an appropriate subset of features can improve classification or cluste...
Assaf Gottlieb, Roy Varshavsky, Michal Linial, Dav...
COCO
1994
Springer
100views Algorithms» more  COCO 1994»
15 years 3 months ago
Relative to a Random Oracle, NP is Not Small
Resource-bounded measure as originated by Lutz is an extension of classical measure theory which provides a probabilistic means of describing the relative sizes of complexity clas...
Steven M. Kautz, Peter Bro Miltersen
CSB
2005
IEEE
189views Bioinformatics» more  CSB 2005»
15 years 5 months ago
Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks
We developed a machine learning system for determining gene functions from heterogeneous sources of data sets using a Weighted Naive Bayesian Network (WNB). The knowledge of gene ...
Xutao Deng, Huimin Geng, Hesham H. Ali