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» On Complexity Measures for Biological Sequences
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WADS
2009
Springer
265views Algorithms» more  WADS 2009»
15 years 6 months ago
A Distribution-Sensitive Dictionary with Low Space Overhead
The time required for a sequence of operations on a data structure is usually measured in terms of the worst possible such sequence. This, however, is often an overestimate of the ...
Prosenjit Bose, John Howat, Pat Morin
BMCBI
2008
138views more  BMCBI 2008»
14 years 11 months ago
M-BISON: Microarray-based integration of data sources using networks
Background: The accurate detection of differentially expressed (DE) genes has become a central task in microarray analysis. Unfortunately, the noise level and experimental variabi...
Bernie J. Daigle Jr., Russ B. Altman
BMCBI
2011
14 years 6 months ago
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
Paolo G. V. Martini, Davide Risso, Gabriele Sales,...
IWOCA
2010
Springer
219views Algorithms» more  IWOCA 2010»
14 years 6 months ago
Efficient Chaining of Seeds in Ordered Trees
We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent wi...
Julien Allali, Cedric Chauve, Pascal Ferraro, Anne...
ISBI
2008
IEEE
16 years 1 days ago
Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images
Segmentation and tracking of cells in fluorescence microscopy image sequences is an important task in many biological studies into cell migration as well as intracellular dynamics...
Oleh Dzyubachyk, Wiro J. Niessen, Erik H. W. Meije...