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» On Complexity Measures for Biological Sequences
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RECOMB
2006
Springer
15 years 11 months ago
Inferring Gene Orders from Gene Maps Using the Breakpoint Distance
Abstract. Preliminary to most comparative genomics studies is the annotation of chromosomes as ordered sequences of genes. Unfortunately, different genetic mapping techniques usual...
Guillaume Blin, Eric Blais, Pierre Guillon, Mathie...
LATA
2009
Springer
15 years 6 months ago
From Gene Trees to Species Trees through a Supertree Approach
Abstract. Gene trees are leaf-labeled trees inferred from molecular sequences. Due to duplication events arising in genome evolution, gene trees usually have multiple copies of som...
Celine Scornavacca, Vincent Berry, Vincent Ranwez
GECCO
2007
Springer
189views Optimization» more  GECCO 2007»
15 years 5 months ago
A more bio-plausible approach to the evolutionary inference of finite state machines
With resemblance of finite-state machines to some biological mechanisms in cells and numerous applications of finite automata in different fields, this paper uses analogies an...
Hooman Shayani, Peter J. Bentley
RECOMB
2005
Springer
15 years 4 months ago
Probabilistic in Silico Prediction of Protein-Peptide Interactions
Abstract. Peptide recognition modules (PRMs) are specialised compact protein domains that mediate many important protein-protein interactions. They are responsible for the assembly...
Wolfgang P. Lehrach, Dirk Husmeier, Christopher K....
IDA
2006
Springer
14 years 11 months ago
Structural hidden Markov models: An application to handwritten numeral recognition
We introduce in this paper a generalization of the widely used hidden Markov models (HMM's), which we name "structural hidden Markov models" (SHMM). Our approach is ...
Djamel Bouchaffra, Jun Tan