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» On Complexity Measures for Biological Sequences
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KDD
2001
ACM
118views Data Mining» more  KDD 2001»
15 years 11 months ago
Infominer: mining surprising periodic patterns
In this paper, we focus on mining surprising periodic patterns in a sequence of events. In many applications, e.g., computational biology, an infrequent pattern is still considere...
Jiong Yang, Wei Wang 0010, Philip S. Yu
BMCBI
2010
91views more  BMCBI 2010»
14 years 11 months ago
Algorithm-driven Artifacts in median polish summarization of Microarray data
Background: High-throughput measurement of transcript intensities using Affymetrix type oligonucleotide microarrays has produced a massive quantity of data during the last decade....
Federico M. Giorgi, Anthony M. Bolger, Marc Lohse,...
CORR
2007
Springer
104views Education» more  CORR 2007»
14 years 11 months ago
Sorting and Selection in Posets
Classical problems of sorting and searching assume an underlying linear ordering of the objects being compared. In this paper, we study a more general setting, in which some pairs...
Constantinos Daskalakis, Richard M. Karp, Elchanan...
BMCBI
2010
105views more  BMCBI 2010»
14 years 11 months ago
Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement
Background: The Medium-chain Dehydrogenases/Reductases (MDR) form a protein superfamily whose size and complexity defeats traditional means of subclassification; it currently has ...
Joel Hedlund, Hans Jörnvall, Bengt Persson
BMCBI
2005
201views more  BMCBI 2005»
14 years 11 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota