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» On Complexity Measures for Biological Sequences
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RECOMB
2000
Springer
15 years 2 months ago
Contig selection in physical mapping
In physical mapping, one orders a set of genetic landmarks or a library of cloned fragments of DNA according to their position in the genome. Our approach to physical mapping divi...
Steffen Heber, Jens Stoye, Jörg D. Hoheisel, ...
RECOMB
2010
Springer
15 years 1 months ago
Algorithms for Detecting Significantly Mutated Pathways in Cancer
Abstract. Recent genome sequencing studies have shown that the somatic mutations that drive cancer development are distributed across a large number of genes. This mutational heter...
Fabio Vandin, Eli Upfal, Benjamin J. Raphael
BIODATAMINING
2008
178views more  BIODATAMINING 2008»
14 years 11 months ago
Clustering-based approaches to SAGE data mining
Serial analysis of gene expression (SAGE) is one of the most powerful tools for global gene expression profiling. It has led to several biological discoveries and biomedical appli...
Haiying Wang, Huiru Zheng, Francisco Azuaje
CORR
2008
Springer
121views Education» more  CORR 2008»
14 years 11 months ago
Rate-Distortion via Markov Chain Monte Carlo
We propose an approach to lossy source coding, utilizing ideas from Gibbs sampling, simulated annealing, and Markov Chain Monte Carlo (MCMC). The idea is to sample a reconstructio...
Shirin Jalali, Tsachy Weissman
COCOON
2009
Springer
15 years 5 months ago
Determination of Glycan Structure from Tandem Mass Spectra
Glycans are molecules made from simple sugars that form complex tree structures. Glycans constitute one of the most important protein modifications, and identification of glycans...
Sebastian Böcker, Birte Kehr, Florian Rasche