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» On Compressibility of Protein Sequences
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76
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BMCBI
2006
109views more  BMCBI 2006»
14 years 9 months ago
A computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions
Background: Phytochromes are photoreceptors, discovered in plants, that control a wide variety of developmental processes. They have also been found in bacteria and fungi, but for...
Tilman Lamparter
ICML
2006
IEEE
15 years 10 months ago
A graphical model for predicting protein molecular function
We present a simple statistical model of molecular function evolution to predict protein function. The model description encodes general knowledge of how molecular function evolve...
Barbara E. Engelhardt, Michael I. Jordan, Steven E...
BIOCOMP
2006
14 years 11 months ago
A Multi-strategy Approach to Protein Structural Alphabet Design
- The search for structural similarity among proteins can provide valuable insights into their functional mechanisms and their functional relationships. Though the protein 1D seque...
Shih-Yen Ku, Yuh-Jyh Hu
BMCBI
2004
229views more  BMCBI 2004»
14 years 9 months ago
Automatic annotation of protein motif function with Gene Ontology terms
Background: Conserved protein sequence motifs are short stretches of amino acid sequence patterns that potentially encode the function of proteins. Several sequence pattern search...
Xinghua Lu, Chengxiang Zhai, Vanathi Gopalakrishna...
69
Voted
COCOON
2005
Springer
15 years 3 months ago
Opportunistic Data Structures for Range Queries
Abstract In this paper, we study the problem of supporting range sum queries on a compressed sequence of values. For a sequence of n k-bit integers, k ≤ O(log n), our data struct...
Chung Keung Poon, Wai Keung Yiu