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» On Compressibility of Protein Sequences
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95
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LPAR
2005
Springer
15 years 6 months ago
A New Constraint Solver for 3D Lattices and Its Application to the Protein Folding Problem
Abstract. The paper describes the formalization and implementation of an efficient constraint programming framework operating on 3D crystal lattices. The framework is motivated an...
Alessandro Dal Palù, Agostino Dovier, Enric...
137
Voted
BMCBI
2010
143views more  BMCBI 2010»
14 years 10 months ago
A genome alignment algorithm based on compression
Background: Traditional genome alignment methods consider sequence alignment as a variation of the string edit distance problem, and perform alignment by matching characters of th...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison
118
Voted
BMCBI
2007
135views more  BMCBI 2007»
15 years 22 days ago
RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that un
Background: Most single stranded RNA (ssRNA) viruses mutate rapidly to generate large number of strains having highly divergent capsid sequences. Accurate strain recognition in un...
Dianhui Zhu, George E. Fox, Sugoto Chakravarty
122
Voted
BMCBI
2002
133views more  BMCBI 2002»
15 years 13 days ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
NAR
2007
127views more  NAR 2007»
15 years 3 days ago
The Universal Protein Resource (UniProt)
The Universal Protein Resource (UniProt) provides the scientific community with a single, centralized, authoritative resource for protein sequences and functional information. For...