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» On Compressibility of Protein Sequences
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BMCBI
2005
132views more  BMCBI 2005»
15 years 15 days ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
DCC
2002
IEEE
15 years 5 months ago
Data Compression of Correlated Non-Binary Sources Using Punctured Turbo Codes
We consider the case of two corr elated non-binary sources. Data compression is achieved by transforming the sequences of non-binary symbols into sequences of bits and then using ...
Ying Zhao, Javier Garcia-Frias
ICPADS
2008
IEEE
15 years 7 months ago
Parallel Large Scale Inference of Protein Domain Families
The resolution of combinatorial assortments of protein sequences into domains is a prerequisite for protein sequence interpretation. However the recognition and clustering of homo...
Daniel Kahn, Clément Rezvoy, Fréd&ea...
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BMCBI
2010
101views more  BMCBI 2010»
15 years 22 days ago
Optimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots
Background: Knottins are small, diverse and stable proteins with important drug design potential. They can be classified in 30 families which cover a wide range of sequences (1621...
Jérôme Gracy, Laurent Chiche
CIBCB
2005
IEEE
15 years 6 months ago
Toward Protein Structure Analysis with Self-Organizing Maps
- Establishing structure-function relationships on the proteomic scale is a unique challenge faced by bioinformatics and molecular biosciences. Large protein families represent nat...
Lutz Hamel, Gongqin Sun, Jing Zhang