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» On Evolutionary Optimization of Large Problems Using Small P...
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JCB
2000
137views more  JCB 2000»
15 years 9 days ago
NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees
Large scale gene duplication is a major force driving the evolution of genetic functional innovation. Whole genome duplications are widely believed to have played an important rol...
Kevin Chen, Dannie Durand, Martin Farach-Colton
122
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BIBE
2006
IEEE
119views Bioinformatics» more  BIBE 2006»
15 years 6 months ago
Large Grain Size Stochastic Optimization Alignment
DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...
ALIFE
2000
15 years 10 days ago
Pattern Formation and Optimization in Army Ant Raids
Army ant colonies display complex foraging raid patterns involving thousands of individuals communicating through chemical trails. In this article we explore, by means of a simple ...
Ricard V. Solé, Eric Bonabeau, Jordi Delgad...
BMCBI
2006
97views more  BMCBI 2006»
15 years 17 days ago
Selecting normalization genes for small diagnostic microarrays
Background: Normalization of gene expression microarrays carrying thousands of genes is based on assumptions that do not hold for diagnostic microarrays carrying only few genes. T...
Jochen Jaeger, Rainer Spang
130
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GECCO
2004
Springer
160views Optimization» more  GECCO 2004»
15 years 5 months ago
Finding Effective Software Metrics to Classify Maintainability Using a Parallel Genetic Algorithm
The ability to predict the quality of a software object can be viewed as a classification problem, where software metrics are the features and expert quality rankings the class lab...
Rodrigo A. Vivanco, Nicolino J. Pizzi