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» On Optimizing Distance-Based Similarity Search for Biologica...
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BMCBI
2005
123views more  BMCBI 2005»
14 years 11 months ago
PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
Background: Protein sequence alignments have become indispensable for virtually any evolutionary, structural or functional study involving proteins. Modern sequence search and com...
Mindaugas Margelevicius, Ceslovas Venclovas
87
Voted
VLDB
2001
ACM
94views Database» more  VLDB 2001»
15 years 4 months ago
FeedbackBypass: A New Approach to Interactive Similarity Query Processing
In recent years, several methods have been proposed for implementing interactive similarity queries on multimedia databases. Common to all these methods is the idea to exploit use...
Ilaria Bartolini, Paolo Ciaccia, Florian Waas
116
Voted
SIGMOD
2010
ACM
210views Database» more  SIGMOD 2010»
14 years 12 months ago
Searching trajectories by locations: an efficiency study
Trajectory search has long been an attractive and challenging topic which blooms various interesting applications in spatial-temporal databases. In this work, we study a new probl...
Zaiben Chen, Heng Tao Shen, Xiaofang Zhou, Yu Zhen...
BMCBI
2008
211views more  BMCBI 2008»
14 years 11 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
NAR
1998
122views more  NAR 1998»
14 years 11 months ago
The PIR-International Protein Sequence Database
The Protein Information Resource (PIR; http://wwwnbrf.georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining...
Winona C. Barker, John S. Garavelli, Daniel H. Haf...