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JMLR
2012
13 years 2 months ago
Active Clustering of Biological Sequences
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...
BMCBI
2002
129views more  BMCBI 2002»
14 years 11 months ago
SeqHound: biological sequence and structure database as a platform for bioinformatics research
Background: SeqHound has been developed as an integrated biological sequence, taxonomy, annotation and 3-D structure database system. It provides a high-performance server platfor...
Katerina Michalickova, Gary D. Bader, Michel Dumon...
SDM
2010
SIAM
153views Data Mining» more  SDM 2010»
15 years 1 months ago
The Generalized Dimensionality Reduction Problem
The dimensionality reduction problem has been widely studied in the database literature because of its application for concise data representation in a variety of database applica...
Charu C. Aggarwal
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
15 years 5 months ago
Indexing DNA Sequences Using q-Grams
We have observed in recent years a growing interest in similarity search on large collections of biological sequences. Contributing to the interest, this paper presents a method fo...
Xia Cao, Shuai Cheng Li, Anthony K. H. Tung
NAR
2011
189views Computer Vision» more  NAR 2011»
14 years 2 months ago
EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities
We present the relational database EDULISS (EDinburgh University Ligand Selection System), which stores structural, physicochemical and pharmacophoric properties of small molecule...
Kun-Yi Hsin, Hugh P. Morgan, Steven R. Shave, Andr...