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» On Pairing Inversion Problems
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124
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RECOMB
2008
Springer
16 years 1 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
RECOMB
2005
Springer
16 years 1 months ago
Rapid Protein Side-Chain Packing via Tree Decomposition
This paper proposes a novel tree decomposition based side-chain assignment algorithm, which can obtain the globally optimal solution of the side-chain packing problem very efficien...
Jinbo Xu
RECOMB
2005
Springer
16 years 1 months ago
Improved Duplication Models for Proteome Network Evolution
Protein-protein interaction networks, particularly that of the yeast S. Cerevisiae, have recently been studied extensively. These networks seem to satisfy the small world property ...
Gürkan Bebek, Petra Berenbrink, Colin Cooper,...
104
Voted
STOC
2003
ACM
188views Algorithms» more  STOC 2003»
16 years 1 months ago
Almost random graphs with simple hash functions
We describe a simple randomized construction for generating pairs of hash functions h1, h2 from a universe U to ranges V = [m] = {0, 1, . . . , m - 1} and W = [m] so that for ever...
Martin Dietzfelbinger, Philipp Woelfel
171
Voted
SIGMOD
2009
ACM
137views Database» more  SIGMOD 2009»
16 years 28 days ago
Entity resolution with iterative blocking
Entity Resolution (ER) is the problem of identifying which records in a database refer to the same real-world entity. An exhaustive ER process involves computing the similarities b...
Steven Euijong Whang, David Menestrina, Georgia Ko...