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» On Pairing Inversion Problems
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BMCBI
2010
120views more  BMCBI 2010»
15 years 4 months ago
Short clones or long clones? A simulation study on the use of paired reads in metagenomics
Background: Metagenomics is the study of environmental samples using sequencing. Rapid advances in sequencing technology are fueling a vast increase in the number and scope of met...
Suparna Mitra, Max Schubach, Daniel H. Huson
BMCBI
2010
112views more  BMCBI 2010»
15 years 4 months ago
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design
Background: Empirical scoring functions have proven useful in protein structure modeling. Most such scoring functions depend on protein side chain conformations. However, backbone...
Andrew J. Bordner
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
15 years 8 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
GIS
2005
ACM
16 years 5 months ago
Close pair queries in moving object databases
Databases of moving objects are important for air traffic control, ground traffic, and battlefield configurations. We introduce the (historical and spatial) range close-pair query...
Panfeng Zhou, Donghui Zhang, Betty Salzberg, Gene ...
RECOMB
2005
Springer
16 years 4 months ago
Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes
Background: Correlations between polymorphic markers and observed phenotypes provide the basis for mapping traits in quantitative genetics. When the phenotype is gene expression, ...
David Kulp, Manjunatha Jagalur