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» On Sequence Prediction for Arbitrary Measures
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RECOMB
2003
Springer
16 years 2 days ago
A multi-expert system for the automatic detection of protein domains from sequence information
We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing multiple sequence alignments that are ...
Niranjan Nagarajan, Golan Yona
OSDI
2006
ACM
16 years 2 days ago
iPlane: An Information Plane for Distributed Services
In this paper, we present the design, implementation, and evaluation of iPlane, a scalable service providing accurate predictions of Internet path performance for emerging overlay...
Harsha V. Madhyastha, Tomas Isdal, Michael Piatek,...
CORR
2006
Springer
101views Education» more  CORR 2006»
14 years 11 months ago
MDL Convergence Speed for Bernoulli Sequences
The Minimum Description Length principle for online sequence estimation/prediction in a proper learning setup is studied. If the underlying model class is discrete, then the total...
Jan Poland, Marcus Hutter
BMCBI
2008
163views more  BMCBI 2008»
14 years 12 months ago
Gene Ontology term overlap as a measure of gene functional similarity
Background: The availability of various high-throughput experimental and computational methods allows biologists to rapidly infer functional relationships between genes. It is oft...
Meeta Mistry, Paul Pavlidis
BIOINFORMATICS
2010
87views more  BIOINFORMATICS 2010»
14 years 12 months ago
Improving protein secondary structure prediction using a simple k-mer model
Motivation: Existing methods for protein sequence analysis are generally firstorder and inherently assume that each position is independent. We develop a general framework for int...
Martin Madera, Ryan Calmus, Grant Thiltgen, Kevin ...