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» On Suboptimal Alignments of Biological Sequences
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BMCBI
2010
90views more  BMCBI 2010»
14 years 12 months ago
Local alignment of generalized k-base encoded DNA sequence
Background: DNA sequence comparison is a well-studied problem, in which two DNA sequences are compared using a weighted edit distance. Recent DNA sequencing technologies however o...
Nils Homer, Stanley F. Nelson, Barry Merriman
BMCBI
2010
103views more  BMCBI 2010»
14 years 12 months ago
MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
Toshihide Hara, Keiko Sato, Masanori Ohya
BMCBI
2004
156views more  BMCBI 2004»
14 years 11 months ago
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...
IISWC
2006
IEEE
15 years 5 months ago
Performance Analysis of Sequence Alignment Applications
— Recent advances in molecular biology have led to a continued growth in the biological information generated by the scientific community. Additionally, this area has become a m...
Friman Sánchez, Esther Salamí, Alex ...
COMAD
2008
15 years 1 months ago
REBMEC: Repeat Based Maximum Entropy Classifier for Biological Sequences
An important problem in biological data analysis is to predict the family of a newly discovered sequence like a protein or DNA sequence, using the collection of available sequence...
Pratibha Rani, Vikram Pudi