314 search results - page 37 / 63 » On Suboptimal Alignments of Biological Sequences |
RECOMB
2003
Springer
16 years 2 months ago
2003
Springer
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
156
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WABI
2009
Springer
15 years 8 months ago
2009
Springer
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
118
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RECOMB
2010
Springer
14 years 11 months ago
2010
Springer
Chaining fragments is a crucial step in genome alignment. Existing chaining algorithms compute a maximum weighted chain with no overlaps allowed between adjacent fragments. In prac...
121
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SAC
2009
ACM
15 years 8 months ago
2009
ACM
Signal finding (pattern discovery) in biological sequences is a fundamental problem in both computer science and molecular biology. Many approaches have been proposed for extract...
103
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VLSISP
2010
14 years 8 months ago
2010
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...